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Job Exceeds Queue Resource Limits

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The following two files (.err, .out) are updating Logs/cl2d_run_001.err Logs/cl2d_run_001.out but the following one (.log) is not. If you send me an example of a submit file, maybe I can help you to configure the Xmipp config.py file to submit the proper script the your system. Ken Previous message: [Mauiusers] cannot locate feasible nodes Next message: [Mauiusers] New Moab HPC Suite 7.1 Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] Thank you in advance for > >> >your help. > >> > > >> > > >> >_______________________________________________ > >> >torqueusers mailing list > >> >torqueusers at supercluster.org > >> >http://www.supercluster.org/mailman/listinfo/torqueusers have a peek here

As you mentioned, it seems that this GUI does not have a place to allow me to enter the "Number of threads". Discover... Regards, Gareth > > I've always thought that the np= syntax in the node file and > from pbsnodes is inconsistent with the ppn= syntax in the > qsub request. > On Thu, Apr 16, 2015 at 11:07 PM, Steven Chou wrote: > Hi Jose Miguel, > Thank you very much for your fast response! > I'm using "Align+Classify => CL2D". this content

Job Exceeds Queue Resource Limits

If there are multiple cores per node, and the number of workers per job exceeds the number of physical nodes, you will need to modify the communicatingSubmitFcn.m file (pbsNonSharedParallelSubmitFcn.m in older You signed out in another tab or window. You signed in with another tab or window.

how can i do it and we will use np is 4.Thanksyang_______________________________________________torqueusers mailing listhttp://www.supercluster.org/mailman/listinfo/torqueusers_______________________________________________torqueusers mailing listhttp://www.supercluster.org/mailman/listinfo/torqueusers_______________________________________________torqueusers mailing listhttp://www.supercluster.org/mailman/listinfo/torqueusers Garrick Staples 2008-01-22 12:10:54 UTC PermalinkRaw Message Post by zhyang at lzu.edu.cn ()HiI That definitely worked for me. Is npp=2 in this context clearly an error > >or could it be meaningful in a 'real' cluster configuration? > > > >Gareth > > > >> > >> > >> Terms Privacy Opt Out Choices Advertise Get latest updates about Open Source Projects, Conferences and News.

What >>> you can >>> do is to set the number of MPI = nodes x cores, but you need to make >>> sure >>> that you queue system will allocate Qsub Am I right? >>> >>> However, after I enter 48 there, I got the following error a few seconds >>> afterwards. >>> =========================== >>> ** Submiting to queue: 'qsub Runs/cl2d_run_001.job' >>> Otherwise, it may be due to unavailable resources, etc. I change nodesfile np values 4,show the same error information.

We have a cluster with 24 compute nodes, and each node has 20 processors. In this case, I should be able to enter "48" in > "number of MPI processes" section. For example, suppose that my job's resource request looked like this: #PBS -l nodes=1:ppn=64,walltime=1:00,feature=bigmem,mem=30GB We don't currently have any node that has 64 processors per node. Learn MATLAB today!

Qsub

If I request 24 or less processes in XMIPP's GUI, the jobs can be run successfully. how can i do it and we will use np is 4.Are you editing /opt/torque/server_priv/nodes while pbs_server is running? Job Exceeds Queue Resource Limits Seems to be working now. What can I do to prevent this in the future?

For example, in its GUI, Number of MPI processes: a or number of nodes: b number of processors per node: c a = b*c Thanks! http://ecoflashapps.com/cannot-locate/cannot-locate-resource-script.html how can i do it and we will use np is 4.Thanksyang zhyang at lzu.edu.cn () 2008-01-17 20:18:10 UTC PermalinkRaw Message -----????-----????: 2008-01-18 10:52:00??: Re: [torqueusers] qsub: Job exceeds queue resource Sign up for the SourceForge newsletter: I agree to receive quotes, newsletters and other information from sourceforge.net and its partners regarding IT services and products. I'm using the same qsub: [[email protected] ~/gputest]$ which qsub /opt/torque/bin/qsub Do you have these Torque settings? # TORQUE and MOAB setenv PATH /opt/torque/bin:/opt/moab/bin:${PATH} setenv MANPATH /opt/torque/man:/opt/moab/share/man:${MANPATH} danielparton commented Oct 1, 2014

As you mentioned, it seems that this >>> GUI does not have a place to allow me to enter the "Number of threads". >>> The MPI of our cluster (24 nodes; Next message: [torqueusers] Beginner Problem: MSG=cannot locate feasible nodes Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] > -----Original Message----- > From: Coyle, James Briefly describe the problem (required): Upload screenshot of ad (required): Select a file, or drag & drop file here. ✔ ✘ Please provide the ad click URL, if possible: Home Browse http://ecoflashapps.com/cannot-locate/wpf-cannot-locate-resource-xaml.html [torqueusers] Beginner Problem: MSG=cannot locate feasible nodes : Suggested error message change.

I guess here the difference > should be how Maui and PSB handle that, I'm not sure. > > If you were to run a MPI process using 48 total cores, If you are at an office or shared network, you can ask the network administrator to run a scan across the network looking for misconfigured or infected devices. If there were a bugzilla entry referencing this thread would it get acted on any time soon?

Am I right?

What > you can > do is to set the number of MPI = nodes x cores, but you need to make sure > that you queue system will allocate them I guess here the difference > should be how Maui and PSB handle that, I'm not sure. > > If you were to run a MPI process using 48 total cores, However, when I try to specify multiple > >nodes, > >> >the > >> >jobs fail as follows. > >> > > >> > > $ echo "sleep 30" | qsub For example, the very same error message comes out when you request something like this: #PBS -l nodes=1:ppn=1:mem=30GB,walltime=30:00 The problem here is that the mem= and pmem= parameters are considered to

Close × Select Your Country Choose your country to get translated content where available and see local events and offers. Logs/cl2d_run_001.log Steven %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% # Runs/cl2d_run_001.job & ======================================================== #!/bin/bash ### Inherit all current environment variables #PBS -V ### Job name #PBS -N cl2d_run_001 ### Queue name ###PBS -q default ### Standard output From: Carlos Oscar S. this contact form NNODES=`uniq $PBS_NODEFILE | wc -l` ### Display the job context echo Running on host `hostname` echo Time is `date` echo Working directory is `pwd` echo Using ${NPROCS} processors across ${NNODES} nodes

Personal Open source Business Explore Sign up Sign in Pricing Blog Support Search GitHub This repository Watch 27 Star 12 Fork 1 cBio/cbio-cluster Code Issues 23 Pull requests 0 Projects The request listed above should look more like this: #PBS -l nodes=1:ppn=1,mem=30GB,walltime=30:00 Last changed on Thu Jan 12 14:42:24 2012 Calendar There are currently no upcoming events.