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ADD REPLY • link written 12 months ago by moanam • 0 This seems to have caused problems further down the line with the otu table not being read properly ADD Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Thanx in advanvce [[alternative HTML version deleted]] ______________________________________________ [hidden email] mailing list https://stat.ethz.ch/mailman/listinfo/r-helpPLEASE do read the posting guide http://www.R-project.org/posting-guide.htmland provide commented, minimal, self-contained, reproducible code. But I am going to reopen this - so I'll get to it in the future. this contact form

For example, if it is already set as: setwd("C:/Users/Z/Desktop/Files/RStudio/Coursera/specdata") go up one level back and set it as: setwd("C:/Users/Z/Desktop/Files/RStudio/Coursera") In other words, do not make "specdata" folder as your working directory. rjbeilstein commented Jul 13, 2015 I agree. more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed I've checked my working directory, and made sure the files are in the right directory. http://stackoverflow.com/questions/27466317/error-in-filefile-rt-cannot-open-the-connection

No idea about BRugsFit –Julián Urbano Mar 7 '14 at 17:03 add a comment| up vote 0 down vote I get this error when trying to write to a temporary directory, Ballpark salary equivalent today of "healthcare benefits" in the US? Toggle navigation | Help Center Contact Us Help Articles Support Forums Knowledgebase Log in Support Forums Get help from your peers Coursera Help Center Community General Questions Submitting R script 1

Selection: 1 | Which part are you submitting? 1: 'pollutantmean' part 1 2: 'pollutantmean' part 2 3: 'pollutantmean' part 3 4: 'pollutantmean' part 4 5: 'complete' part 1 6: 'complete' part Reload to refresh your session. it worked. > getwd()[1] "/Users/alevy/Desktop/_coursera_R/week2"> dir()[1] "pollutantmean.R" "specdata" "submitscript1.R"> source("/Users/alevy/Desktop/_coursera_R/week2/pollutantmean.R")> source("/Users/alevy/Desktop/_coursera_R/week2/submitscript1.R")> submitscript1()Error: could not find function "submitscript1"> submit() Press Enter to continue... | Is the following information correct? If I receive written permission to use content from a paper without citing, is it plagiarism?

share|improve this answer answered Jun 26 '15 at 2:56 capt-calculator 1077 add a comment| up vote 2 down vote Set your working directory one level/folder higher. I can't get the project submitted. Also, I think it's bad practice to put user files in the R library directory. read.csv("C:/R/P506A-data-time-v3.csv", header = TRUE) Jan 3, 2014 Vernon Hedge · The University of Manchester Thanks Ana, that was really frustrating me too.

Problems with hgu133plus2 Hi everybody, I'm trying to to install and make package hgu133plus2 work on my computer. Understanding how backslashes work in R strings also sometimes causes problems, though you seem to be using forward slashes so that may not apply here. Type 'q()' to quit R. > library(phyloseq) > library(ggplot2) > biom_otu_tax <- import_biom("D:/from_qiime/micro/results/otus_open_ref_R1otu_table_mc2_w_tax_no_pynast_failures.biom") Error in file(con, "r") : cannot open the connection > setwd("~/Uni/2015/ECOL491/Hard drive/from_qiime/micro/results/otus_open_ref_R1") > biom_otu_tax <- import_biom("C:/Users/Moana/Documents/Uni/2015/ECOL491/Hard drive/from_qiime/micro/results/otus_open_ref_R1otu_table_mc2_w_tax_no_pynast_failures.biom") Error please help me out.

Developer does not see priority in git Development Workflow being followed Why won't curl download this link when a browser will? you could try here Hell everyone! Topics Biostatistics × 785 Questions 47,628 Followers Follow Bipartite × Topic pending review Follow R CRAN × 59 Questions 221 Followers Follow Jan 3, 2014 Share Facebook Twitter LinkedIn Google+ 0 more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed

Can dispel magic end a darkness spell? http://ecoflashapps.com/cannot-open/cannot-open-tacacs-connection-for.html After I changed the directory in the R Studio, I was able to submitted the scripts. Can someone help me out with this? Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help.

Multiline code is pretty much unreadable in comments. –smacdonald Jul 26 '15 at 5:49 add a comment| 4 Answers 4 active oldest votes up vote 2 down vote You need to I'll ask the phyloseq maintainer to have a look at this. All the data files are in the same folder as the .R codes. navigate here Error with library hgu95av2 Hello!

with /Software/Embedded Controllers) .OO#. .OO#. Understanding how backslashes work in R strings also sometimes causes problems, though you seem to be using forward slashes so that may not apply here. I must admit though that my experience running debug mode goes as far as java with eclipse so rStudio isn't exactly my forte :/ –ASwiftPeregrine Feb 19 '15 at 4:22 add

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Not the answer you're looking for? On August 27, 2014 10:41:23 PM PDT, Girija Kalyani wrote: >Dear R Group, > >I have an species occurence file stored in dismo/ex/abc.csv. >When i read the file, If you confirm the directory is there but you only see a subset of files that you expect, then you may have a permissions problem. See below: > dir() [1] "001.csv" "002.csv" "003.csv" "004.csv" "005.csv" "006.csv" [7] "007.csv" "008.csv" "009.csv" "010.csv" "011.csv" "012.csv" [13] "013.csv" "014.csv" "015.csv" "016.csv" "017.csv" "018.csv" [19] "019.csv" "020.csv" "021.csv" "022.csv" "023.csv"

Why won't curl download this link when a browser will? I run Wi... In it, you'll get: The week's top questions and answers Important community announcements Questions that need answers see an example newsletter By subscribing, you agree to the privacy policy and terms his comment is here Add your answer Question followers (11) See all Joyce C Faler The Amalgamated Sugar Company Debasish Mukherjee Saha Institute of Nuclear Physics Vernon Hedge The University of Manchester

It seems everything is fine... Appreciate it. Why did the best potions master have greasy hair? Pen Tester's Programming Style SMS verification, is it secure?

Thanks pollutantmean <- function(directory, pollutant = "nitrate", id= 1:332) { if(grep("specdata",directory) ==1) { directory <- ("./specdata") } mean_polldata <- c() specdatafiles <- as.character(list.files(directory)) specdatapaths <- paste(directory, specdatafiles, sep="") for(i in id) GIBBS October 17, 2015 13:10 Actions Permalink I just submitted parts 1-4 without a problem (so in the right wd and have the data) but can't get parts 5-7 to work. I wasn't using directory at all, so I needed to add it. Already have an account?

rocks...1k --------------------------------------------------------------------------- Sent from my phone. Here's a sample session: R version 3.2.1 (2015-06-18) -- "World-Famous Astronaut" Copyright (C) 2015 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY Thank you. 0 Ping-Ching October 16, 2015 20:04 Actions Permalink Hi all, rprog-033 After sourcing all .R files and make sure they are all in the same folder as all the share|improve this answer answered Sep 12 '15 at 12:36 Frank Tiernan 1 add a comment| Your Answer draft saved draft discarded Sign up or log in Sign up using Google

Are there continuous functions for which the epsilon-delta property doesn't hold? Use 'import_qiime_sample_data' instead. Got a question you need answered quickly? how to close a hdf5 file I am using the rhdf5 library to create HDF5 files.

These are the files in my working directory > list.files()[1] "pollutantmean.R" "rprog-scripts-submitscript1 (1).R"[3] "specdata" Whenever I try to submit my assignment I get this error message Selection: 1Error in source("pollutantmean.R") : I've searched the web to try and find this solution. Then it will work. I changed one method signature and broke 25,000 other classes.